IL_6GZX_225

3D structure

PDB id

6GZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (ice)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.57 Å

Loop

Sequence

CUGGGCUAAGUGGUAAAGGAUG*CGCCGAAAAUGAUCGGGGCUUAAGCCCAG

Length

51 nucleotides

Bulged bases

6GZX|1|A2|A|1068, 6GZX|1|A2|A|1069, 6GZX|1|A2|U|1071, 6GZX|1|A2|U|1074, 6GZX|1|A2|U|1081, 6GZX|1|A2|A|1175, 6GZX|1|A2|U|1178, 6GZX|1|A2|U|1188, 6GZX|1|A2|U|1189

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GZX|1|A2|C|1061
6GZX|1|A2|U|1062
6GZX|1|A2|G|1063
6GZX|1|A2|G|1064
6GZX|1|A2|G|1065
6GZX|1|A2|C|1066
6GZX|1|A2|U|1067
6GZX|1|A2|A|1068
6GZX|1|A2|A|1069
6GZX|1|A2|G|1070
6GZX|1|A2|U|1071
6GZX|1|A2|G|1072
6GZX|1|A2|G|1073
6GZX|1|A2|U|1074
6GZX|1|A2|A|1075
6GZX|1|A2|A|1076
6GZX|1|A2|A|1077
6GZX|1|A2|G|1078
6GZX|1|A2|G|1079
6GZX|1|A2|A|1080
6GZX|1|A2|U|1081
6GZX|1|A2|G|1082
*
6GZX|1|A2|C|1169
6GZX|1|A2|G|1170
6GZX|1|A2|C|1171
6GZX|1|A2|C|1172
6GZX|1|A2|G|1173
6GZX|1|A2|A|1174
6GZX|1|A2|A|1175
6GZX|1|A2|A|1176
6GZX|1|A2|A|1177
6GZX|1|A2|U|1178
6GZX|1|A2|G|1179
6GZX|1|A2|A|1180
6GZX|1|A2|U|1181
6GZX|1|A2|C|1182
6GZX|1|A2|G|1183
6GZX|1|A2|G|1184
6GZX|1|A2|G|1185
6GZX|1|A2|G|1186
6GZX|1|A2|C|1187
6GZX|1|A2|U|1188
6GZX|1|A2|U|1189
6GZX|1|A2|A|1190
6GZX|1|A2|A|1191
6GZX|1|A2|G|1192
6GZX|1|A2|C|1193
6GZX|1|A2|C|1194
6GZX|1|A2|C|1195
6GZX|1|A2|A|1196
6GZX|1|A2|G|1197

Current chains

Chain A2

23S ribosomal RNA

Nearby chains

Chain B2

5S ribosomal RNA; 5S rRNA

Chain D2

50S ribosomal protein L3

Chain G2

50S ribosomal protein L6

Chain I2

50S ribosomal protein L13

Chain L2

50S ribosomal protein L16

Chain P2

50S ribosomal protein L20

Chain e2

50S ribosomal protein L36