IL_6GZX_242

3D structure

PDB id

6GZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (ice)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.57 Å

Loop

Sequence

CAUCAGCUAGUUG*CAAGGCGACGACG

Length

26 nucleotides

Bulged bases

6GZX|1|A3|U|239, 6GZX|1|A3|G|270, 6GZX|1|A3|C|275

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GZX|1|A3|C|237
6GZX|1|A3|A|238
6GZX|1|A3|U|239
6GZX|1|A3|C|240
6GZX|1|A3|A|241
6GZX|1|A3|G|242
6GZX|1|A3|C|243
6GZX|1|A3|U|244
6GZX|1|A3|A|245
6GZX|1|A3|G|246
6GZX|1|A3|U|247
6GZX|1|A3|U|248
6GZX|1|A3|G|249
*
6GZX|1|A3|C|267
6GZX|1|A3|A|268
6GZX|1|A3|A|269
6GZX|1|A3|G|270
6GZX|1|A3|G|271
6GZX|1|A3|C|272
6GZX|1|A3|G|273
6GZX|1|A3|A|274
6GZX|1|A3|C|275
6GZX|1|A3|G|276
6GZX|1|A3|A|277
6GZX|1|A3|C|278
6GZX|1|A3|G|279

Current chains

Chain A3

16S ribosomal RNA

Nearby chains

Chain L3

30S ribosomal protein S12

Chain Q3

30S ribosomal protein S17