IL_6GZX_246

3D structure

PDB id

6GZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (ice)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.57 Å

Loop

Sequence

UCCGUGCCAG*CGGUAAUACGGA

Length

22 nucleotides

Bulged bases

6GZX|1|A3|A|515, 6GZX|1|A3|U|517, 6GZX|1|A3|A|518

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GZX|1|A3|U|495
6GZX|1|A3|C|496
6GZX|1|A3|C|497
6GZX|1|A3|G|498
6GZX|1|A3|U|499
6GZX|1|A3|G|500
6GZX|1|A3|C|501
6GZX|1|A3|C|502
6GZX|1|A3|A|503
6GZX|1|A3|G|504
*
6GZX|1|A3|C|511
6GZX|1|A3|G|512
6GZX|1|A3|G|513
6GZX|1|A3|U|514
6GZX|1|A3|A|515
6GZX|1|A3|A|516
6GZX|1|A3|U|517
6GZX|1|A3|A|518
6GZX|1|A3|C|519
6GZX|1|A3|G|520
6GZX|1|A3|G|521
6GZX|1|A3|A|522

Current chains

Chain A3

16S ribosomal RNA

Nearby chains

Chain C3

30S ribosomal protein S3

Chain D3

30S ribosomal protein S4

Chain L3

30S ribosomal protein S12

Chain V3

Ribosome hibernation promoting factor