IL_6GZX_248

3D structure

PDB id

6GZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (ice)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.57 Å

Loop

Sequence

GAGUAG*CGCAGAUAC

Length

15 nucleotides

Bulged bases

6GZX|1|A3|A|685

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZX_248 not in the Motif Atlas

Homologous match to IL_6CZR_143

Geometric discrepancy: 0.3243

The information below is about IL_6CZR_143

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_37722.1

Basepair signature

cWW-L-tSH-L-tHW-tHS-R-cWW-L

Number of instances in this motif group

2

Unit IDs

6GZX|1|A3|G|666
6GZX|1|A3|A|667
6GZX|1|A3|G|668
6GZX|1|A3|U|669
6GZX|1|A3|A|670
6GZX|1|A3|G|671
*
6GZX|1|A3|C|682
6GZX|1|A3|G|683
6GZX|1|A3|C|684
6GZX|1|A3|A|685
6GZX|1|A3|G|686
6GZX|1|A3|A|687
6GZX|1|A3|U|688
6GZX|1|A3|A|689
6GZX|1|A3|C|690

Current chains

Chain A3

16S ribosomal RNA

Nearby chains

Chain A1

Large subunit ribosomal RNA; LSU rRNA

Chain K3

30S ribosomal protein S11