3D structure

PDB id
6GZX (explore in PDB, NAKB, or RNA 3D Hub)
Description
T. thermophilus hibernating 100S ribosome (ice)
Experimental method
ELECTRON MICROSCOPY
Resolution
4.57 Å

Loop

Sequence
CCCACUACAAAGCG*CGCAAAAAGGUGGG
Length
28 nucleotides
Bulged bases
6GZX|1|A3|A|1267
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6GZX|1|A3|C|1223
6GZX|1|A3|C|1224
6GZX|1|A3|C|1225
6GZX|1|A3|A|1226
6GZX|1|A3|C|1227
6GZX|1|A3|U|1228
6GZX|1|A3|A|1229
6GZX|1|A3|C|1230
6GZX|1|A3|A|1231
6GZX|1|A3|A|1232
6GZX|1|A3|A|1233
6GZX|1|A3|G|1234
6GZX|1|A3|C|1235
6GZX|1|A3|G|1236
*
6GZX|1|A3|C|1263
6GZX|1|A3|G|1264
6GZX|1|A3|C|1265
6GZX|1|A3|A|1266
6GZX|1|A3|A|1267
6GZX|1|A3|A|1268
6GZX|1|A3|A|1269
6GZX|1|A3|A|1270
6GZX|1|A3|G|1271
6GZX|1|A3|G|1272
6GZX|1|A3|U|1273
6GZX|1|A3|G|1274
6GZX|1|A3|G|1275
6GZX|1|A3|G|1276

Current chains

Chain A3
16S ribosomal RNA

Nearby chains

Chain C3
30S ribosomal protein S3
Chain G3
30S ribosomal protein S7
Chain I3
30S ribosomal protein S9
Chain J3
30S ribosomal protein S10
Chain M3
30S ribosomal protein S13
Chain N3
30S ribosomal protein S14 type Z
Chain U3
30S ribosomal protein Thx

Coloring options:

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