IL_6GZX_263

3D structure

PDB id

6GZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (ice)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.57 Å

Loop

Sequence

GGGAGC*GUC

Length

9 nucleotides

Bulged bases

6GZX|1|A4|G|759

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZX_263 not in the Motif Atlas

Geometric match to IL_4V88_435

Geometric discrepancy: 0.315

The information below is about IL_4V88_435

Detailed Annotation

Other IL

Broad Annotation

Other IL

Motif group

IL_22046.1

Basepair signature

cWW-L-cWW-L-cWW-L

Number of instances in this motif group

2

Unit IDs

6GZX|1|A4|G|757
6GZX|1|A4|G|758
6GZX|1|A4|G|759
6GZX|1|A4|A|760
6GZX|1|A4|G|761
6GZX|1|A4|C|762
*
6GZX|1|A4|G|786
6GZX|1|A4|U|787
6GZX|1|A4|C|788

Current chains

Chain A4

16S ribosomal RNA

Nearby chains

Chain A2

Large subunit ribosomal RNA; LSU rRNA

Chain C2

50S ribosomal protein L2

Chain K4

30S ribosomal protein S11