IL_6GZX_265

3D structure

PDB id

6GZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (ice)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.57 Å

Loop

Sequence

CCGCCCGUCAC*GAAGUCGUAACAAG

Length

25 nucleotides

Bulged bases

6GZX|1|A4|C|1382, 6GZX|1|A4|A|1469, 6GZX|1|A4|A|1470, 6GZX|1|A4|A|1479, 6GZX|1|A4|A|1480

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GZX|1|A4|C|1381
6GZX|1|A4|C|1382
6GZX|1|A4|G|1383
6GZX|1|A4|C|1384
6GZX|1|A4|C|1385
6GZX|1|A4|C|1386
6GZX|1|A4|G|1387
6GZX|1|A4|U|1388
6GZX|1|A4|C|1389
6GZX|1|A4|A|1390
6GZX|1|A4|C|1391
*
6GZX|1|A4|G|1468
6GZX|1|A4|A|1469
6GZX|1|A4|A|1470
6GZX|1|A4|G|1471
6GZX|1|A4|U|1472
6GZX|1|A4|C|1473
6GZX|1|A4|G|1474
6GZX|1|A4|U|1475
6GZX|1|A4|A|1476
6GZX|1|A4|A|1477
6GZX|1|A4|C|1478
6GZX|1|A4|A|1479
6GZX|1|A4|A|1480
6GZX|1|A4|G|1481

Current chains

Chain A4

16S ribosomal RNA

Nearby chains

Chain A2

Large subunit ribosomal RNA; LSU rRNA

Chain L4

30S ribosomal protein S12

Chain V4

Ribosome hibernation promoting factor