IL_6GZX_272

3D structure

PDB id

6GZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (ice)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.57 Å

Loop

Sequence

GACCC*GGGC

Length

9 nucleotides

Bulged bases

6GZX|1|A1|A|1267

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZX_272 not in the Motif Atlas

Geometric match to IL_8CRE_401

Geometric discrepancy: 0.2927

The information below is about IL_8CRE_401

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65740.1

Basepair signature

cWW-L-R-L-R-cWW

Number of instances in this motif group

6

Unit IDs

6GZX|1|A1|G|1266
6GZX|1|A1|A|1267
6GZX|1|A1|C|1268
6GZX|1|A1|C|1269
6GZX|1|A1|C|1270
*
6GZX|1|A1|G|1275
6GZX|1|A1|G|1276
6GZX|1|A1|G|1277
6GZX|1|A1|C|1278

Current chains

Chain A1

23S ribosomal RNA

Nearby chains

Chain P1

50S ribosomal protein L20

Chain Q1

50S ribosomal protein L21