IL_6GZX_278

3D structure

PDB id

6GZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (ice)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.57 Å

Loop

Sequence

UG*CAAG

Length

6 nucleotides

Bulged bases

6GZX|1|A1|A|2556

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZX_278 not in the Motif Atlas

Homologous match to IL_7A0S_091

Geometric discrepancy: 0.4469

The information below is about IL_7A0S_091

Detailed Annotation

Major groove platform with intercalation

Broad Annotation

Major groove platform

Motif group

IL_94991.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

17

Unit IDs

6GZX|1|A1|U|2536
6GZX|1|A1|G|2537
*
6GZX|1|A1|C|2554
6GZX|1|A1|A|2555
6GZX|1|A1|A|2556
6GZX|1|A1|G|2557

Current chains

Chain A1

23S ribosomal RNA

Nearby chains

Chain I1

50S ribosomal protein L13

Chain e1

50S ribosomal protein L36