IL_6GZX_287

3D structure

PDB id

6GZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (ice)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.57 Å

Loop

Sequence

CUC*GCGAG

Length

8 nucleotides

Bulged bases

6GZX|1|A2|G|2590, 6GZX|1|A2|A|2591

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZX_287 not in the Motif Atlas

Homologous match to IL_7A0S_089

Geometric discrepancy: 0.4113

The information below is about IL_7A0S_089

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_68118.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

29

Unit IDs

6GZX|1|A2|C|2524
6GZX|1|A2|U|2525
6GZX|1|A2|C|2526
*
6GZX|1|A2|G|2588
6GZX|1|A2|C|2589
6GZX|1|A2|G|2590
6GZX|1|A2|A|2591
6GZX|1|A2|G|2592

Current chains

Chain A2

23S ribosomal RNA

Nearby chains

Chain D2

50S ribosomal protein L3

Chain a2

50S ribosomal protein L32