IL_6GZZ_027

3D structure

PDB id

6GZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (amc)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.13 Å

Loop

Sequence

GUC*GC

Length

5 nucleotides

Bulged bases

6GZZ|1|A1|U|1060

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZZ_027 not in the Motif Atlas

Geometric match to IL_4V9F_039

Geometric discrepancy: 0.2742

The information below is about IL_4V9F_039

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

6GZZ|1|A1|G|1059
6GZZ|1|A1|U|1060
6GZZ|1|A1|C|1061
*
6GZZ|1|A1|G|1197
6GZZ|1|A1|C|1198

Current chains

Chain A1

23S ribosomal RNA

Nearby chains

Chain I1

50S ribosomal protein L13

Chain P1

50S ribosomal protein L20