IL_6GZZ_040

3D structure

PDB id

6GZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (amc)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.13 Å

Loop

Sequence

UAG*CAGG

Length

7 nucleotides

Bulged bases

6GZZ|1|A1|G|1608

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZZ_040 not in the Motif Atlas

Homologous match to IL_7RQB_056

Geometric discrepancy: 0.3112

The information below is about IL_7RQB_056

Detailed Annotation

Isolated tWW turn

Broad Annotation

No text annotation

Motif group

IL_54997.7

Basepair signature

cWW-tWW-cWW

Number of instances in this motif group

8

Unit IDs

6GZZ|1|A1|U|1481
6GZZ|1|A1|A|1482
6GZZ|1|A1|G|1483
*
6GZZ|1|A1|C|1606
6GZZ|1|A1|A|1607
6GZZ|1|A1|G|1608
6GZZ|1|A1|G|1609

Current chains

Chain A1

23S ribosomal RNA

Nearby chains