3D structure

PDB id
6GZZ (explore in PDB, NAKB, or RNA 3D Hub)
Description
T. thermophilus hibernating 100S ribosome (amc)
Experimental method
ELECTRON MICROSCOPY
Resolution
4.13 Å

Loop

Sequence
CGUAAC*GGAGAAG
Length
13 nucleotides
Bulged bases
6GZZ|1|A1|G|1748
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6GZZ_047 not in the Motif Atlas
Homologous match to IL_7RQB_068
Geometric discrepancy: 0.2272
The information below is about IL_7RQB_068
Detailed Annotation
tSH-tSH-tHH-tHS
Broad Annotation
No text annotation
Motif group
IL_65969.2
Basepair signature
cWW-tSH-tSH-tHH-tHS-cWW
Number of instances in this motif group
8

Unit IDs

6GZZ|1|A1|C|1735
6GZZ|1|A1|G|1736
6GZZ|1|A1|U|1737
6GZZ|1|A1|A|1738
6GZZ|1|A1|A|1739
6GZZ|1|A1|C|1740
*
6GZZ|1|A1|G|1745
6GZZ|1|A1|G|1746
6GZZ|1|A1|A|1747
6GZZ|1|A1|G|1748
6GZZ|1|A1|A|1749
6GZZ|1|A1|A|1750
6GZZ|1|A1|G|1751

Current chains

Chain A1
23S ribosomal RNA

Nearby chains

Chain A3
Small subunit ribosomal RNA; SSU rRNA
Chain C1
50S ribosomal protein L2

Coloring options:


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