IL_6GZZ_049

3D structure

PDB id

6GZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (amc)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.13 Å

Loop

Sequence

CUGCGAAC*GGAGGUAUAG

Length

18 nucleotides

Bulged bases

6GZZ|1|A1|G|1834, 6GZZ|1|A1|G|1849, 6GZZ|1|A1|U|1853

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GZZ|1|A1|C|1830
6GZZ|1|A1|U|1831
6GZZ|1|A1|G|1832
6GZZ|1|A1|C|1833
6GZZ|1|A1|G|1834
6GZZ|1|A1|A|1835
6GZZ|1|A1|A|1836
6GZZ|1|A1|C|1837
*
6GZZ|1|A1|G|1846
6GZZ|1|A1|G|1847
6GZZ|1|A1|A|1848
6GZZ|1|A1|G|1849
6GZZ|1|A1|G|1850
6GZZ|1|A1|U|1851
6GZZ|1|A1|A|1852
6GZZ|1|A1|U|1853
6GZZ|1|A1|A|1854
6GZZ|1|A1|G|1855

Current chains

Chain A1

23S ribosomal RNA

Nearby chains

Chain A3

Small subunit ribosomal RNA; SSU rRNA

Chain C1

50S ribosomal protein L2