IL_6GZZ_051

3D structure

PDB id

6GZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (amc)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.13 Å

Loop

Sequence

UG*UGAA

Length

6 nucleotides

Bulged bases

6GZZ|1|A1|A|1924

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZZ_051 not in the Motif Atlas

Homologous match to IL_7A0S_067

Geometric discrepancy: 0.2258

The information below is about IL_7A0S_067

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_66635.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

27

Unit IDs

6GZZ|1|A1|U|1874
6GZZ|1|A1|G|1875
*
6GZZ|1|A1|U|1922
6GZZ|1|A1|G|1923
6GZZ|1|A1|A|1924
6GZZ|1|A1|A|1925

Current chains

Chain A1

23S ribosomal RNA

Nearby chains

Chain C1

50S ribosomal protein L2