IL_6GZZ_053

3D structure

PDB id

6GZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (amc)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.13 Å

Loop

Sequence

UCAAG*CGAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZZ_053 not in the Motif Atlas

Homologous match to IL_4WF9_073

Geometric discrepancy: 0.3658

The information below is about IL_4WF9_073

Detailed Annotation

UAA/GAN with extra stack

Broad Annotation

No text annotation

Motif group

IL_89021.3

Basepair signature

cWW-L-R-L-R-tHS-cWW

Number of instances in this motif group

7

Unit IDs

6GZZ|1|A1|U|1884
6GZZ|1|A1|C|1885
6GZZ|1|A1|A|1886
6GZZ|1|A1|A|1887
6GZZ|1|A1|G|1888
*
6GZZ|1|A1|C|1911
6GZZ|1|A1|G|1912
6GZZ|1|A1|A|1913
6GZZ|1|A1|A|1914
6GZZ|1|A1|G|1915

Current chains

Chain A1

23S ribosomal RNA

Nearby chains

Chain C1

50S ribosomal protein L2