IL_6GZZ_062

3D structure

PDB id

6GZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (amc)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.13 Å

Loop

Sequence

CCCUCAGGCGGGACGGAAAUCCGCCGGAGAGC*GUAGAAGGG

Length

41 nucleotides

Bulged bases

6GZZ|1|A1|G|2333, 6GZZ|1|A1|G|2348

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GZZ|1|A1|C|2307
6GZZ|1|A1|C|2308
6GZZ|1|A1|C|2309
6GZZ|1|A1|U|2310
6GZZ|1|A1|C|2311
6GZZ|1|A1|A|2312
6GZZ|1|A1|G|2313
6GZZ|1|A1|G|2314
6GZZ|1|A1|C|2315
6GZZ|1|A1|G|2316
6GZZ|1|A1|G|2317
6GZZ|1|A1|G|2318
6GZZ|1|A1|A|2319
6GZZ|1|A1|C|2320
6GZZ|1|A1|G|2321
6GZZ|1|A1|G|2322
6GZZ|1|A1|A|2323
6GZZ|1|A1|A|2324
6GZZ|1|A1|A|2325
6GZZ|1|A1|U|2326
6GZZ|1|A1|C|2327
6GZZ|1|A1|C|2328
6GZZ|1|A1|G|2329
6GZZ|1|A1|C|2330
6GZZ|1|A1|C|2331
6GZZ|1|A1|G|2332
6GZZ|1|A1|G|2333
6GZZ|1|A1|A|2334
6GZZ|1|A1|G|2335
6GZZ|1|A1|A|2336
6GZZ|1|A1|G|2337
6GZZ|1|A1|C|2338
*
6GZZ|1|A1|G|2345
6GZZ|1|A1|U|2346
6GZZ|1|A1|A|2347
6GZZ|1|A1|G|2348
6GZZ|1|A1|A|2349
6GZZ|1|A1|A|2350
6GZZ|1|A1|G|2351
6GZZ|1|A1|G|2352
6GZZ|1|A1|G|2353

Current chains

Chain A1

23S ribosomal RNA

Nearby chains

Chain B1

5S ribosomal RNA; 5S rRNA

Chain F1

50S ribosomal protein L5

Chain N1

50S ribosomal protein L18

Chain V1

50S ribosomal protein L27