IL_6GZZ_083

3D structure

PDB id

6GZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (amc)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.13 Å

Loop

Sequence

GUC*GC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZZ_083 not in the Motif Atlas

Geometric match to IL_7A0S_054

Geometric discrepancy: 0.2512

The information below is about IL_7A0S_054

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_26793.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

16

Unit IDs

6GZZ|1|A2|G|560
6GZZ|1|A2|U|561
6GZZ|1|A2|C|562
*
6GZZ|1|A2|G|584
6GZZ|1|A2|C|585

Current chains

Chain A2

23S ribosomal RNA

Nearby chains

Chain I2

50S ribosomal protein L13

Chain P2

50S ribosomal protein L20

Chain Q2

50S ribosomal protein L21