IL_6GZZ_098

3D structure

PDB id

6GZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (amc)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.13 Å

Loop

Sequence

CCA*UG

Length

5 nucleotides

Bulged bases

6GZZ|1|A2|C|1043

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZZ_098 not in the Motif Atlas

Homologous match to IL_7A0S_032

Geometric discrepancy: 0.3243

The information below is about IL_7A0S_032

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_05642.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

50

Unit IDs

6GZZ|1|A2|C|1042
6GZZ|1|A2|C|1043
6GZZ|1|A2|A|1044
*
6GZZ|1|A2|U|1207
6GZZ|1|A2|G|1208

Current chains

Chain A2

23S ribosomal RNA

Nearby chains

Chain I2

50S ribosomal protein L13

Chain P2

50S ribosomal protein L20

Chain Q2

50S ribosomal protein L21

Chain Y2

50S ribosomal protein L30