IL_6GZZ_105

3D structure

PDB id

6GZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (amc)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.13 Å

Loop

Sequence

GAUG*CGC

Length

7 nucleotides

Bulged bases

6GZZ|1|A2|U|1081

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZZ_105 not in the Motif Atlas

Homologous match to IL_7RQB_041

Geometric discrepancy: 0.2303

The information below is about IL_7RQB_041

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_43275.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

30

Unit IDs

6GZZ|1|A2|G|1079
6GZZ|1|A2|A|1080
6GZZ|1|A2|U|1081
6GZZ|1|A2|G|1082
*
6GZZ|1|A2|C|1169
6GZZ|1|A2|G|1170
6GZZ|1|A2|C|1171

Current chains

Chain A2

23S ribosomal RNA

Nearby chains

Chain G2

50S ribosomal protein L6

Chain L2

50S ribosomal protein L16

Chain e2

50S ribosomal protein L36