IL_6GZZ_108

3D structure

PDB id

6GZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (amc)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.13 Å

Loop

Sequence

UUCC*GAA

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZZ_108 not in the Motif Atlas

Geometric match to IL_4N0T_004

Geometric discrepancy: 0.3905

The information below is about IL_4N0T_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_32983.1

Basepair signature

cWW-L-cWW-cWW

Number of instances in this motif group

7

Unit IDs

6GZZ|1|A2|U|1245
6GZZ|1|A2|U|1246
6GZZ|1|A2|C|1247
6GZZ|1|A2|C|1248
*
6GZZ|1|A2|G|1293
6GZZ|1|A2|A|1294
6GZZ|1|A2|A|1295

Current chains

Chain A2

23S ribosomal RNA

Nearby chains

Chain E2

50S ribosomal protein L4

Chain K2

50S ribosomal protein L15

Chain P2

50S ribosomal protein L20