IL_6GZZ_111

3D structure

PDB id

6GZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (amc)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.13 Å

Loop

Sequence

GAC*GC

Length

5 nucleotides

Bulged bases

6GZZ|1|A2|A|1267

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZZ_111 not in the Motif Atlas

Homologous match to IL_7RQB_048

Geometric discrepancy: 0.2832

The information below is about IL_7RQB_048

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_37497.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

118

Unit IDs

6GZZ|1|A2|G|1266
6GZZ|1|A2|A|1267
6GZZ|1|A2|C|1268
*
6GZZ|1|A2|G|1277
6GZZ|1|A2|C|1278

Current chains

Chain A2

23S ribosomal RNA

Nearby chains

Chain P2

50S ribosomal protein L20

Chain Q2

50S ribosomal protein L21