IL_6GZZ_121

3D structure

PDB id

6GZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (amc)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.13 Å

Loop

Sequence

GCG*CGAC

Length

7 nucleotides

Bulged bases

6GZZ|1|A2|A|2005

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZZ_121 not in the Motif Atlas

Geometric match to IL_5UNE_007

Geometric discrepancy: 0.2844

The information below is about IL_5UNE_007

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

6GZZ|1|A2|G|1803
6GZZ|1|A2|C|1804
6GZZ|1|A2|G|1805
*
6GZZ|1|A2|C|2003
6GZZ|1|A2|G|2004
6GZZ|1|A2|A|2005
6GZZ|1|A2|C|2006

Current chains

Chain A2

23S ribosomal RNA

Nearby chains

Chain C2

50S ribosomal protein L2