IL_6GZZ_143

3D structure

PDB id

6GZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (amc)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.13 Å

Loop

Sequence

ACG*CAGU

Length

7 nucleotides

Bulged bases

6GZZ|1|A2|A|2616

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZZ_143 not in the Motif Atlas

Homologous match to IL_7A0S_092

Geometric discrepancy: 0.3321

The information below is about IL_7A0S_092

Detailed Annotation

Other IL

Broad Annotation

Other IL

Motif group

IL_10892.1

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

39

Unit IDs

6GZZ|1|A2|A|2604
6GZZ|1|A2|C|2605
6GZZ|1|A2|G|2606
*
6GZZ|1|A2|C|2615
6GZZ|1|A2|A|2616
6GZZ|1|A2|G|2617
6GZZ|1|A2|U|2618

Current chains

Chain A2

23S ribosomal RNA

Nearby chains

Chain C2

50S ribosomal protein L2