IL_6GZZ_156

3D structure

PDB id

6GZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (amc)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.13 Å

Loop

Sequence

CGUG*CGACG

Length

9 nucleotides

Bulged bases

6GZZ|1|A3|A|392

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZZ_156 not in the Motif Atlas

Geometric match to IL_4V88_429

Geometric discrepancy: 0.3983

The information below is about IL_4V88_429

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_30621.4

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

66

Unit IDs

6GZZ|1|A3|C|43
6GZZ|1|A3|G|44
6GZZ|1|A3|U|45
6GZZ|1|A3|G|46
*
6GZZ|1|A3|C|390
6GZZ|1|A3|G|391
6GZZ|1|A3|A|392
6GZZ|1|A3|C|393
6GZZ|1|A3|G|394

Current chains

Chain A3

16S ribosomal RNA

Nearby chains

Chain D3

30S ribosomal protein S4

Chain P3

30S ribosomal protein S16