IL_6GZZ_171

3D structure

PDB id

6GZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (amc)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.13 Å

Loop

Sequence

GUC*GAUAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZZ_171 not in the Motif Atlas

Geometric match to IL_6DME_002

Geometric discrepancy: 0.3106

The information below is about IL_6DME_002

Detailed Annotation

8-nt loop receptor

Broad Annotation

Loop-receptor motif

Motif group

IL_44025.1

Basepair signature

cWW-cWW-tHS-cSH-cSH-cWW

Number of instances in this motif group

3

Unit IDs

6GZZ|1|A3|G|580
6GZZ|1|A3|U|581
6GZZ|1|A3|C|582
*
6GZZ|1|A3|G|622
6GZZ|1|A3|A|623
6GZZ|1|A3|U|624
6GZZ|1|A3|A|625
6GZZ|1|A3|C|626

Current chains

Chain A3

16S ribosomal RNA

Nearby chains

Chain H3

30S ribosomal protein S8

Chain Q3

30S ribosomal protein S17