IL_6GZZ_173

3D structure

PDB id

6GZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (amc)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.13 Å

Loop

Sequence

GA*UGAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZZ_173 not in the Motif Atlas

Homologous match to IL_5J7L_031

Geometric discrepancy: 0.2663

The information below is about IL_5J7L_031

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

Major groove platform

Motif group

IL_50694.7

Basepair signature

cWW-tSH-cWW-L

Number of instances in this motif group

27

Unit IDs

6GZZ|1|A3|G|637
6GZZ|1|A3|A|638
*
6GZZ|1|A3|U|734
6GZZ|1|A3|G|735
6GZZ|1|A3|A|736
6GZZ|1|A3|C|737

Current chains

Chain A3

16S ribosomal RNA

Nearby chains

Chain H3

30S ribosomal protein S8

Chain O3

30S ribosomal protein S15