IL_6GZZ_175
3D structure
- PDB id
- 6GZZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- T. thermophilus hibernating 100S ribosome (amc)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.13 Å
Loop
- Sequence
- GGGAGC*GUC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6GZZ_175 not in the Motif Atlas
- Geometric match to IL_4V88_435
- Geometric discrepancy: 0.2637
- The information below is about IL_4V88_435
- Detailed Annotation
- Other IL
- Broad Annotation
- Other IL
- Motif group
- IL_22046.1
- Basepair signature
- cWW-L-cWW-L-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
6GZZ|1|A3|G|757
6GZZ|1|A3|G|758
6GZZ|1|A3|G|759
6GZZ|1|A3|A|760
6GZZ|1|A3|G|761
6GZZ|1|A3|C|762
*
6GZZ|1|A3|G|786
6GZZ|1|A3|U|787
6GZZ|1|A3|C|788
Current chains
- Chain A3
- 16S ribosomal RNA
Nearby chains
- Chain A1
- Large subunit ribosomal RNA; LSU rRNA
- Chain C1
- 50S ribosomal protein L2
- Chain K3
- 30S ribosomal protein S11
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