IL_6GZZ_178

3D structure

PDB id

6GZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (amc)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.13 Å

Loop

Sequence

GA*UAC

Length

5 nucleotides

Bulged bases

6GZZ|1|A3|A|1376

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZZ_178 not in the Motif Atlas

Homologous match to IL_6CZR_147

Geometric discrepancy: 0.285

The information below is about IL_6CZR_147

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

130

Unit IDs

6GZZ|1|A3|G|899
6GZZ|1|A3|A|900
*
6GZZ|1|A3|U|1375
6GZZ|1|A3|A|1376
6GZZ|1|A3|C|1377

Current chains

Chain A3

16S ribosomal RNA

Nearby chains

Chain E3

30S ribosomal protein S5