IL_6GZZ_181

3D structure

PDB id

6GZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (amc)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.13 Å

Loop

Sequence

GUC*GUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZZ_181 not in the Motif Atlas

Homologous match to IL_5J7L_050

Geometric discrepancy: 0.3237

The information below is about IL_5J7L_050

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_28037.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

65

Unit IDs

6GZZ|1|A3|G|1043
6GZZ|1|A3|U|1044
6GZZ|1|A3|C|1045
*
6GZZ|1|A3|G|1174
6GZZ|1|A3|U|1175
6GZZ|1|A3|C|1176

Current chains

Chain A3

16S ribosomal RNA

Nearby chains

Chain C3

30S ribosomal protein S3

Chain E3

30S ribosomal protein S5

Chain J3

30S ribosomal protein S10

Chain N3

30S ribosomal protein S14 type Z