IL_6GZZ_182

3D structure

PDB id

6GZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (amc)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.13 Å

Loop

Sequence

GAUGCCACCCG*CGGGGAGCUAAUC

Length

24 nucleotides

Bulged bases

6GZZ|1|A3|U|1238, 6GZZ|1|A3|A|1256, 6GZZ|1|A3|U|1259, 6GZZ|1|A3|A|1261, 6GZZ|1|A3|U|1262

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GZZ|1|A3|G|1236
6GZZ|1|A3|A|1237
6GZZ|1|A3|U|1238
6GZZ|1|A3|G|1239
6GZZ|1|A3|C|1240
6GZZ|1|A3|C|1241
6GZZ|1|A3|A|1242
6GZZ|1|A3|C|1243
6GZZ|1|A3|C|1244
6GZZ|1|A3|C|1245
6GZZ|1|A3|G|1246
*
6GZZ|1|A3|C|1251
6GZZ|1|A3|G|1252
6GZZ|1|A3|G|1253
6GZZ|1|A3|G|1254
6GZZ|1|A3|G|1255
6GZZ|1|A3|A|1256
6GZZ|1|A3|G|1257
6GZZ|1|A3|C|1258
6GZZ|1|A3|U|1259
6GZZ|1|A3|A|1260
6GZZ|1|A3|A|1261
6GZZ|1|A3|U|1262
6GZZ|1|A3|C|1263

Current chains

Chain A3

16S ribosomal RNA

Nearby chains

Chain C3

30S ribosomal protein S3

Chain I3

30S ribosomal protein S9

Chain J3

30S ribosomal protein S10

Chain N3

30S ribosomal protein S14 type Z

Chain U3

30S ribosomal protein Thx