IL_6GZZ_185

3D structure

PDB id

6GZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (amc)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.13 Å

Loop

Sequence

GCCC*GUAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZZ_185 not in the Motif Atlas

Geometric match to IL_8CRE_467

Geometric discrepancy: 0.3331

The information below is about IL_8CRE_467

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65718.4

Basepair signature

cWW-cSH-cWS-cWW-cWW

Number of instances in this motif group

4

Unit IDs

6GZZ|1|A3|G|1383
6GZZ|1|A3|C|1384
6GZZ|1|A3|C|1385
6GZZ|1|A3|C|1386
*
6GZZ|1|A3|G|1474
6GZZ|1|A3|U|1475
6GZZ|1|A3|A|1476
6GZZ|1|A3|A|1477
6GZZ|1|A3|C|1478

Current chains

Chain A3

16S ribosomal RNA

Nearby chains

Chain L3

30S ribosomal protein S12

Chain V3

Ribosome hibernation promoting factor