IL_6GZZ_187

3D structure

PDB id

6GZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (amc)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.13 Å

Loop

Sequence

CGAAG*CGAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZZ_187 not in the Motif Atlas

Geometric match to IL_3FS0_001

Geometric discrepancy: 0.3167

The information below is about IL_3FS0_001

Detailed Annotation

UAA/GAN related

Broad Annotation

No text annotation

Motif group

IL_77691.5

Basepair signature

cWW-tSH-L-R-L-cWW

Number of instances in this motif group

7

Unit IDs

6GZZ|1|A3|C|1413
6GZZ|1|A3|G|1414
6GZZ|1|A3|A|1415
6GZZ|1|A3|A|1416
6GZZ|1|A3|G|1417
*
6GZZ|1|A3|C|1443
6GZZ|1|A3|G|1444
6GZZ|1|A3|A|1445
6GZZ|1|A3|G|1446

Current chains

Chain A3

16S ribosomal RNA

Nearby chains

Chain A1

Large subunit ribosomal RNA; LSU rRNA

Chain O1

50S ribosomal protein L19

Chain T3

30S ribosomal protein S20