IL_6GZZ_194

3D structure

PDB id

6GZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (amc)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.13 Å

Loop

Sequence

CGG*CCGG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZZ_194 not in the Motif Atlas

Geometric match to IL_4V87_185

Geometric discrepancy: 0.3962

The information below is about IL_4V87_185

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_09990.3

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

3

Unit IDs

6GZZ|1|A4|C|131
6GZZ|1|A4|G|132
6GZZ|1|A4|G|133
*
6GZZ|1|A4|C|219
6GZZ|1|A4|C|220
6GZZ|1|A4|G|221
6GZZ|1|A4|G|222

Current chains

Chain A4

16S ribosomal RNA

Nearby chains

Chain P4

30S ribosomal protein S16

Chain T4

30S ribosomal protein S20