IL_6GZZ_202

3D structure

PDB id

6GZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (amc)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.13 Å

Loop

Sequence

GCCU*GGC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZZ_202 not in the Motif Atlas

Geometric match to IL_4V87_185

Geometric discrepancy: 0.3645

The information below is about IL_4V87_185

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_09990.3

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

3

Unit IDs

6GZZ|1|A4|G|571
6GZZ|1|A4|C|572
6GZZ|1|A4|C|573
6GZZ|1|A4|U|574
*
6GZZ|1|A4|G|632
6GZZ|1|A4|G|633
6GZZ|1|A4|C|634

Current chains

Chain A4

16S ribosomal RNA

Nearby chains

Chain H4

30S ribosomal protein S8

Chain O4

30S ribosomal protein S15