3D structure

PDB id
6GZZ (explore in PDB, NAKB, or RNA 3D Hub)
Description
T. thermophilus hibernating 100S ribosome (amc)
Experimental method
ELECTRON MICROSCOPY
Resolution
4.13 Å

Loop

Sequence
GA*UGAC
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6GZZ_203 not in the Motif Atlas
Geometric match to IL_1KUQ_001
Geometric discrepancy: 0.2176
The information below is about IL_1KUQ_001
Detailed Annotation
Major groove platform; stack outside cWW
Broad Annotation
Major groove platform
Motif group
IL_50694.7
Basepair signature
cWW-tSH-cWW-L
Number of instances in this motif group
27

Unit IDs

6GZZ|1|A4|G|637
6GZZ|1|A4|A|638
*
6GZZ|1|A4|U|734
6GZZ|1|A4|G|735
6GZZ|1|A4|A|736
6GZZ|1|A4|C|737

Current chains

Chain A4
16S ribosomal RNA

Nearby chains

Chain H4
30S ribosomal protein S8
Chain O4
30S ribosomal protein S15

Coloring options:


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