IL_6GZZ_212

3D structure

PDB id

6GZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (amc)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.13 Å

Loop

Sequence

CG*CUG

Length

5 nucleotides

Bulged bases

6GZZ|1|A4|U|1177

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZZ_212 not in the Motif Atlas

Homologous match to IL_4LFB_046

Geometric discrepancy: 0.4347

The information below is about IL_4LFB_046

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

6GZZ|1|A4|C|1042
6GZZ|1|A4|G|1043
*
6GZZ|1|A4|C|1176
6GZZ|1|A4|U|1177
6GZZ|1|A4|G|1178

Current chains

Chain A4

16S ribosomal RNA

Nearby chains

Chain C4

30S ribosomal protein S3

Chain E4

30S ribosomal protein S5

Chain J4

30S ribosomal protein S10

Chain N4

30S ribosomal protein S14 type Z

Chain V4

Ribosome hibernation promoting factor