IL_6GZZ_227

3D structure

PDB id

6GZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (amc)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.13 Å

Loop

Sequence

CGUAAGCCC*GGGCGGGUGCAAGAGCACUCAG

Length

31 nucleotides

Bulged bases

6GZZ|1|A1|A|1350, 6GZZ|1|A1|A|1680, 6GZZ|1|A1|A|1681

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GZZ|1|A1|C|1346
6GZZ|1|A1|G|1347
6GZZ|1|A1|U|1348
6GZZ|1|A1|A|1349
6GZZ|1|A1|A|1350
6GZZ|1|A1|G|1351
6GZZ|1|A1|C|1352
6GZZ|1|A1|C|1353
6GZZ|1|A1|C|1354
*
6GZZ|1|A1|G|1670
6GZZ|1|A1|G|1671
6GZZ|1|A1|G|1672
6GZZ|1|A1|C|1673
6GZZ|1|A1|G|1674
6GZZ|1|A1|G|1675
6GZZ|1|A1|G|1676
6GZZ|1|A1|U|1677
6GZZ|1|A1|G|1678
6GZZ|1|A1|C|1679
6GZZ|1|A1|A|1680
6GZZ|1|A1|A|1681
6GZZ|1|A1|G|1682
6GZZ|1|A1|A|1683
6GZZ|1|A1|G|1684
6GZZ|1|A1|C|1685
6GZZ|1|A1|A|1686
6GZZ|1|A1|C|1687
6GZZ|1|A1|U|1688
6GZZ|1|A1|C|1689
6GZZ|1|A1|A|1690
6GZZ|1|A1|G|1691

Current chains

Chain A1

23S ribosomal RNA

Nearby chains

Chain c1

50S ribosomal protein L34