IL_6GZZ_232

3D structure

PDB id

6GZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (amc)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.13 Å

Loop

Sequence

UCUUGGUCGCGCCUGCGUAGGAUAG*CCUGGCGCGGCUGGGG

Length

41 nucleotides

Bulged bases

6GZZ|1|A1|G|2128, 6GZZ|1|A1|C|2135, 6GZZ|1|A1|U|2137, 6GZZ|1|A1|G|2139, 6GZZ|1|A1|A|2143, 6GZZ|1|A1|C|2212

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GZZ|1|A1|U|2120
6GZZ|1|A1|C|2121
6GZZ|1|A1|U|2122
6GZZ|1|A1|U|2123
6GZZ|1|A1|G|2124
6GZZ|1|A1|G|2125
6GZZ|1|A1|U|2126
6GZZ|1|A1|C|2127
6GZZ|1|A1|G|2128
6GZZ|1|A1|C|2129
6GZZ|1|A1|G|2130
6GZZ|1|A1|C|2131
6GZZ|1|A1|C|2132
6GZZ|1|A1|U|2133
6GZZ|1|A1|G|2134
6GZZ|1|A1|C|2135
6GZZ|1|A1|G|2136
6GZZ|1|A1|U|2137
6GZZ|1|A1|A|2138
6GZZ|1|A1|G|2139
6GZZ|1|A1|G|2140
6GZZ|1|A1|A|2141
6GZZ|1|A1|U|2142
6GZZ|1|A1|A|2143
6GZZ|1|A1|G|2144
*
6GZZ|1|A1|C|2202
6GZZ|1|A1|C|2203
6GZZ|1|A1|U|2204
6GZZ|1|A1|G|2205
6GZZ|1|A1|G|2206
6GZZ|1|A1|C|2207
6GZZ|1|A1|G|2208
6GZZ|1|A1|C|2209
6GZZ|1|A1|G|2210
6GZZ|1|A1|G|2211
6GZZ|1|A1|C|2212
6GZZ|1|A1|U|2213
6GZZ|1|A1|G|2214
6GZZ|1|A1|G|2215
6GZZ|1|A1|G|2216
6GZZ|1|A1|G|2217

Current chains

Chain A1

23S ribosomal RNA

Nearby chains

Chain H1

50S ribosomal protein L9