IL_6GZZ_249

3D structure

PDB id

6GZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (amc)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.13 Å

Loop

Sequence

UGUAGAGCACUGA*UCAAACUCCGAAG

Length

26 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GZZ|1|A2|U|907
6GZZ|1|A2|G|908
6GZZ|1|A2|U|909
6GZZ|1|A2|A|910
6GZZ|1|A2|G|911
6GZZ|1|A2|A|912
6GZZ|1|A2|G|913
6GZZ|1|A2|C|914
6GZZ|1|A2|A|915
6GZZ|1|A2|C|916
6GZZ|1|A2|U|917
6GZZ|1|A2|G|918
6GZZ|1|A2|A|919
*
6GZZ|1|A2|U|955
6GZZ|1|A2|C|956
6GZZ|1|A2|A|957
6GZZ|1|A2|A|958
6GZZ|1|A2|A|959
6GZZ|1|A2|C|960
6GZZ|1|A2|U|961
6GZZ|1|A2|C|962
6GZZ|1|A2|C|963
6GZZ|1|A2|G|964
6GZZ|1|A2|A|965
6GZZ|1|A2|A|966
6GZZ|1|A2|G|967

Current chains

Chain A2

23S ribosomal RNA

Nearby chains

Chain B2

5S ribosomal RNA; 5S rRNA

Chain L2

50S ribosomal protein L16

Chain U2

50S ribosomal protein L25

Chain V2

50S ribosomal protein L27