IL_6GZZ_253

3D structure

PDB id

6GZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (amc)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.13 Å

Loop

Sequence

CAAG*CGCAAACCGACACAGGUG

Length

22 nucleotides

Bulged bases

6GZZ|1|A2|C|1655, 6GZZ|1|A2|A|1662, 6GZZ|1|A2|A|1666

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GZZ|1|A2|C|1354
6GZZ|1|A2|A|1355
6GZZ|1|A2|A|1356
6GZZ|1|A2|G|1357
*
6GZZ|1|A2|C|1653
6GZZ|1|A2|G|1654
6GZZ|1|A2|C|1655
6GZZ|1|A2|A|1656
6GZZ|1|A2|A|1657
6GZZ|1|A2|A|1658
6GZZ|1|A2|C|1659
6GZZ|1|A2|C|1660
6GZZ|1|A2|G|1661
6GZZ|1|A2|A|1662
6GZZ|1|A2|C|1663
6GZZ|1|A2|A|1664
6GZZ|1|A2|C|1665
6GZZ|1|A2|A|1666
6GZZ|1|A2|G|1667
6GZZ|1|A2|G|1668
6GZZ|1|A2|U|1669
6GZZ|1|A2|G|1670

Current chains

Chain A2

23S ribosomal RNA

Nearby chains

Chain R2

50S ribosomal protein L22

Chain c2

50S ribosomal protein L34