IL_6GZZ_269

3D structure

PDB id

6GZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (amc)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.13 Å

Loop

Sequence

CACGGCGUCAAGCCGGUAAGGA*UCCGAGG

Length

29 nucleotides

Bulged bases

6GZZ|1|A2|C|2809, 6GZZ|1|A2|G|2818

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GZZ|1|A2|C|2804
6GZZ|1|A2|A|2805
6GZZ|1|A2|C|2806
6GZZ|1|A2|G|2807
6GZZ|1|A2|G|2808
6GZZ|1|A2|C|2809
6GZZ|1|A2|G|2810
6GZZ|1|A2|U|2811
6GZZ|1|A2|C|2812
6GZZ|1|A2|A|2813
6GZZ|1|A2|A|2814
6GZZ|1|A2|G|2815
6GZZ|1|A2|C|2816
6GZZ|1|A2|C|2817
6GZZ|1|A2|G|2818
6GZZ|1|A2|G|2819
6GZZ|1|A2|U|2820
6GZZ|1|A2|A|2821
6GZZ|1|A2|A|2822
6GZZ|1|A2|G|2823
6GZZ|1|A2|G|2824
6GZZ|1|A2|A|2825
*
6GZZ|1|A2|U|2899
6GZZ|1|A2|C|2900
6GZZ|1|A2|C|2901
6GZZ|1|A2|G|2902
6GZZ|1|A2|A|2903
6GZZ|1|A2|G|2904
6GZZ|1|A2|G|2905

Current chains

Chain A2

23S ribosomal RNA

Nearby chains

Chain D2

50S ribosomal protein L3

Chain R2

50S ribosomal protein L22

Chain a2

50S ribosomal protein L32