3D structure

PDB id
6GZZ (explore in PDB, NAKB, or RNA 3D Hub)
Description
T. thermophilus hibernating 100S ribosome (amc)
Experimental method
ELECTRON MICROSCOPY
Resolution
4.13 Å

Loop

Sequence
CAUCAGCUAGUUG*CAAGGCGACGACG
Length
26 nucleotides
Bulged bases
6GZZ|1|A3|U|239, 6GZZ|1|A3|G|270, 6GZZ|1|A3|C|275
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6GZZ|1|A3|C|237
6GZZ|1|A3|A|238
6GZZ|1|A3|U|239
6GZZ|1|A3|C|240
6GZZ|1|A3|A|241
6GZZ|1|A3|G|242
6GZZ|1|A3|C|243
6GZZ|1|A3|U|244
6GZZ|1|A3|A|245
6GZZ|1|A3|G|246
6GZZ|1|A3|U|247
6GZZ|1|A3|U|248
6GZZ|1|A3|G|249
*
6GZZ|1|A3|C|267
6GZZ|1|A3|A|268
6GZZ|1|A3|A|269
6GZZ|1|A3|G|270
6GZZ|1|A3|G|271
6GZZ|1|A3|C|272
6GZZ|1|A3|G|273
6GZZ|1|A3|A|274
6GZZ|1|A3|C|275
6GZZ|1|A3|G|276
6GZZ|1|A3|A|277
6GZZ|1|A3|C|278
6GZZ|1|A3|G|279

Current chains

Chain A3
16S ribosomal RNA

Nearby chains

Chain L3
30S ribosomal protein S12
Chain Q3
30S ribosomal protein S17

Coloring options:

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