IL_6GZZ_280

3D structure

PDB id

6GZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (amc)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.13 Å

Loop

Sequence

GCGUGUAGG*CUGAGGCGC

Length

18 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GZZ|1|A3|G|560
6GZZ|1|A3|C|561
6GZZ|1|A3|G|562
6GZZ|1|A3|U|563
6GZZ|1|A3|G|564
6GZZ|1|A3|U|565
6GZZ|1|A3|A|566
6GZZ|1|A3|G|567
6GZZ|1|A3|G|568
*
6GZZ|1|A3|C|739
6GZZ|1|A3|U|740
6GZZ|1|A3|G|741
6GZZ|1|A3|A|742
6GZZ|1|A3|G|743
6GZZ|1|A3|G|744
6GZZ|1|A3|C|745
6GZZ|1|A3|G|746
6GZZ|1|A3|C|747

Current chains

Chain A3

16S ribosomal RNA

Nearby chains

Chain A1

Large subunit ribosomal RNA; LSU rRNA

Chain H3

30S ribosomal protein S8

Chain L3

30S ribosomal protein S12

Chain O3

30S ribosomal protein S15

Chain Q3

30S ribosomal protein S17