IL_6GZZ_293

3D structure

PDB id

6GZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (amc)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.13 Å

Loop

Sequence

GGAGGAAGAAGC*GGUGUAAACUCC

Length

24 nucleotides

Bulged bases

6GZZ|1|A4|A|407, 6GZZ|1|A4|A|427

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GZZ|1|A4|G|401
6GZZ|1|A4|G|402
6GZZ|1|A4|A|403
6GZZ|1|A4|G|404
6GZZ|1|A4|G|405
6GZZ|1|A4|A|406
6GZZ|1|A4|A|407
6GZZ|1|A4|G|408
6GZZ|1|A4|A|409
6GZZ|1|A4|A|410
6GZZ|1|A4|G|411
6GZZ|1|A4|C|412
*
6GZZ|1|A4|G|420
6GZZ|1|A4|G|421
6GZZ|1|A4|U|422
6GZZ|1|A4|G|423
6GZZ|1|A4|U|424
6GZZ|1|A4|A|425
6GZZ|1|A4|A|426
6GZZ|1|A4|A|427
6GZZ|1|A4|C|428
6GZZ|1|A4|U|429
6GZZ|1|A4|C|430
6GZZ|1|A4|C|431

Current chains

Chain A4

16S ribosomal RNA

Nearby chains

Chain D4

30S ribosomal protein S4