3D structure

PDB id
6GZZ (explore in PDB, NAKB, or RNA 3D Hub)
Description
T. thermophilus hibernating 100S ribosome (amc)
Experimental method
ELECTRON MICROSCOPY
Resolution
4.13 Å

Loop

Sequence
GGUGG*CGCCGAUGGCGAAGGCAGCC
Length
25 nucleotides
Bulged bases
6GZZ|1|A4|U|706
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6GZZ|1|A4|G|653
6GZZ|1|A4|G|654
6GZZ|1|A4|U|655
6GZZ|1|A4|G|656
6GZZ|1|A4|G|657
*
6GZZ|1|A4|C|700
6GZZ|1|A4|G|701
6GZZ|1|A4|C|702
6GZZ|1|A4|C|703
6GZZ|1|A4|G|704
6GZZ|1|A4|A|705
6GZZ|1|A4|U|706
6GZZ|1|A4|G|707
6GZZ|1|A4|G|708
6GZZ|1|A4|C|709
6GZZ|1|A4|G|710
6GZZ|1|A4|A|711
6GZZ|1|A4|A|712
6GZZ|1|A4|G|713
6GZZ|1|A4|G|714
6GZZ|1|A4|C|715
6GZZ|1|A4|A|716
6GZZ|1|A4|G|717
6GZZ|1|A4|C|718
6GZZ|1|A4|C|719

Current chains

Chain A4
16S ribosomal RNA

Nearby chains

Chain F4
30S ribosomal protein S6
Chain K4
30S ribosomal protein S11
Chain O4
30S ribosomal protein S15
Chain R4
30S ribosomal protein S18
Chain V4
Ribosome hibernation promoting factor

Coloring options:

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