IL_6GZZ_305

3D structure

PDB id

6GZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (amc)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.13 Å

Loop

Sequence

CCC*GGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZZ_305 not in the Motif Atlas

Homologous match to IL_4WF9_121

Geometric discrepancy: 0.3624

The information below is about IL_4WF9_121

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10167.6

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

51

Unit IDs

6GZZ|1|B1|C|6
6GZZ|1|B1|C|7
6GZZ|1|B1|C|8
*
6GZZ|1|B1|G|117
6GZZ|1|B1|G|118
6GZZ|1|B1|G|119

Current chains

Chain B1

5S ribosomal RNA

Nearby chains

Chain N1

50S ribosomal protein L18