IL_6GZZ_308

3D structure

PDB id

6GZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (amc)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.13 Å

Loop

Sequence

UCGGACACCGAAUCCCCAGCCUAG*CGAAAGGUGGGGGGAUAGGUGA

Length

46 nucleotides

Bulged bases

6GZZ|1|A1|A|308, 6GZZ|1|A1|G|377, 6GZZ|1|A1|G|378, 6GZZ|1|A1|G|386

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GZZ|1|A1|U|297
6GZZ|1|A1|C|298
6GZZ|1|A1|G|299
6GZZ|1|A1|G|300
6GZZ|1|A1|A|301
6GZZ|1|A1|C|302
6GZZ|1|A1|A|303
6GZZ|1|A1|C|304
6GZZ|1|A1|C|305
6GZZ|1|A1|G|306
6GZZ|1|A1|A|307
6GZZ|1|A1|A|308
6GZZ|1|A1|U|309
6GZZ|1|A1|C|310
6GZZ|1|A1|C|311
6GZZ|1|A1|C|312
6GZZ|1|A1|C|313
6GZZ|1|A1|A|314
6GZZ|1|A1|G|315
6GZZ|1|A1|C|316
6GZZ|1|A1|C|317
6GZZ|1|A1|U|318
6GZZ|1|A1|A|319
6GZZ|1|A1|G|320
*
6GZZ|1|A1|C|368
6GZZ|1|A1|G|369
6GZZ|1|A1|A|370
6GZZ|1|A1|A|371
6GZZ|1|A1|A|372
6GZZ|1|A1|G|373
6GZZ|1|A1|G|374
6GZZ|1|A1|U|375
6GZZ|1|A1|G|376
6GZZ|1|A1|G|377
6GZZ|1|A1|G|378
6GZZ|1|A1|G|379
6GZZ|1|A1|G|380
6GZZ|1|A1|G|381
6GZZ|1|A1|A|382
6GZZ|1|A1|U|383
6GZZ|1|A1|A|384
6GZZ|1|A1|G|385
6GZZ|1|A1|G|386
6GZZ|1|A1|U|387
6GZZ|1|A1|G|388
6GZZ|1|A1|A|389

Current chains

Chain A1

23S ribosomal RNA

Nearby chains

Chain T1

50S ribosomal protein L24