IL_6GZZ_313

3D structure

PDB id

6GZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (amc)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.13 Å

Loop

Sequence

CGAUGCCGAUGAAG*UGGAGGUAAGG

Length

25 nucleotides

Bulged bases

6GZZ|1|A1|U|1252, 6GZZ|1|A1|U|1258

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GZZ|1|A1|C|1249
6GZZ|1|A1|G|1250
6GZZ|1|A1|A|1251
6GZZ|1|A1|U|1252
6GZZ|1|A1|G|1253
6GZZ|1|A1|C|1254
6GZZ|1|A1|C|1255
6GZZ|1|A1|G|1256
6GZZ|1|A1|A|1257
6GZZ|1|A1|U|1258
6GZZ|1|A1|G|1259
6GZZ|1|A1|A|1260
6GZZ|1|A1|A|1261
6GZZ|1|A1|G|1262
*
6GZZ|1|A1|U|1282
6GZZ|1|A1|G|1283
6GZZ|1|A1|G|1284
6GZZ|1|A1|A|1285
6GZZ|1|A1|G|1286
6GZZ|1|A1|G|1287
6GZZ|1|A1|U|1288
6GZZ|1|A1|A|1289
6GZZ|1|A1|A|1290
6GZZ|1|A1|G|1291
6GZZ|1|A1|G|1292

Current chains

Chain A1

23S ribosomal RNA

Nearby chains

Chain E1

50S ribosomal protein L4

Chain K1

50S ribosomal protein L15

Chain P1

50S ribosomal protein L20