IL_6GZZ_314

3D structure

PDB id

6GZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (amc)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.13 Å

Loop

Sequence

AGAAG*UGGU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZZ_314 not in the Motif Atlas

Homologous match to IL_9DFE_059

Geometric discrepancy: 0.4972

The information below is about IL_9DFE_059

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_23774.1

Basepair signature

cWW-L-R-L-tHS-cWW

Number of instances in this motif group

11

Unit IDs

6GZZ|1|A1|A|1518
6GZZ|1|A1|G|1519
6GZZ|1|A1|A|1520
6GZZ|1|A1|A|1521
6GZZ|1|A1|G|1522
*
6GZZ|1|A1|U|1568
6GZZ|1|A1|G|1569
6GZZ|1|A1|G|1570
6GZZ|1|A1|U|1571

Current chains

Chain A1

23S ribosomal RNA

Nearby chains